13 Entry, exit and transmission
Microorganisms must attach to, or penetrate, the host’s body surfaces
The mammalian host can be considered as a series of body surfaces (Fig. 13.1). To establish themselves on or in the host, microorganisms must either attach to, or penetrate, one of these body surfaces. The outer surface, covered by skin or fur, protects and isolates the body from the outside world, forming a dry, horny, relatively impermeable outer layer. Elsewhere, however, there has to be more intimate contact and exchange with the outside world. Therefore, in the alimentary, respiratory and urogenital tracts, where food is absorbed, gases exchanged and urine and sexual products released, respectively, the lining consists of one or more layers of living cells. In the eye, the skin is replaced by a transparent layer of living cells, the conjunctiva. Well-developed cleansing and defence mechanisms are present at all these body surfaces, and entry of microorganisms always has to occur in the face of these natural mechanisms. Successful microorganisms therefore possess efficient mechanisms for attaching to, and often traversing, these body surfaces.
Receptor molecules
There are often specific molecules on microbes that bind to receptor molecules on host cells, either at the body surface (viruses, bacteria) or in tissues (viruses). These receptor molecules, of which there may be more than one, are not present for the benefit of the virus or other infectious agent; they have specific functions in the life of the cell. Very occasionally, the receptor molecule is present only in certain cells, which are then uniquely susceptible to infection. Examples include the CD4 molecule and the CCR5 beta-chemokine receptor for HIV, the C3d receptor (CR2) for Epstein–Barr virus, and alpha-dystroglycan seems to act as receptor for M. leprae in Schwann cells (the same receptor can be used by arenaviruses). In these cases, the presence of the receptor molecule determines microbial tropism and accounts for the distinctive pattern of infection. Receptors are therefore critical determinants of cell susceptibility, not only at the body surface, but in all tissues. After binding to the susceptible cell, the microorganism can multiply at the surface (mycoplasma, Bordetella pertussis) or enter the cell and infect it (viruses, chlamydia; see Ch. 15).
Sites of entry
Skin
Microorganisms gaining entry via the skin may cause a skin infection or infection elsewhere
Microorganisms which infect or enter the body via the skin are listed in Table 13.1. On the skin, microorganisms other than residents of the normal flora (see Ch. 8) are soon inactivated, especially by fatty acids (skin pH is about 5.5), and probably by substances secreted by sebaceous and other glands, and certain peptides formed locally by keratinocytes protect against invasion by group A streptococci. Materials produced by the normal flora of the skin also protect against infection. Skin bacteria may enter hair follicles or sebaceous glands to cause styes and boils, or teat canals to cause staphylococcal mastitis.
Table 13.1 Microorganisms that infect via the skin
Microorganism | Disease | Comments |
---|---|---|
Arthropod-borne viruses | Various fevers | 150 distinct viruses, transmitted by bite of infected arthropod |
Rabies virus | Rabies | Bite from infected animals |
Human papillomaviruses | Warts | Infection restricted to epidermis |
Staphylococci | Boils | Commonest skin invaders |
Rickettsia | Typhus, spotted fevers | Infestation with infected arthropod |
Leptospira | Leptospirosis | Contact with water containing infected animals’ urine |
Streptococci | Impetigo, erysipelas | Concurrent pharyngeal infection in one-third of cases |
Bacillus anthracis | Cutaneous anthrax | Systemic disease following local lesion at inoculation site |
Treponema pallidum and T. pertenue | Syphilis, yaws | Warm, moist skin susceptible |
Yersinia pestis, Plasmodia | Plague, malaria | Bite from infected rodent flea or mosquito |
Trichophyton spp. and other fungi | Ringworm, athlete’s foot | Infection restricted to skin, nails, hair |
Ancylostoma duodenale (or Necator americanus) | Hookworm | Silent entry of larvae through skin of, e.g. foot |
Filarial nematodes | Filariasis | Bite from infected mosquito, midge, blood-sucking fly |
Schistosoma spp. | Schistosomiasis | Larvae (cercariae) from infected snail penetrate skin during wading or bathing |
Some remain restricted to the skin (papillomaviruses, ringworm), whereas others enter the body after growth in the skin (syphilis) or after mechanical transfer across the skin (arthropod-borne infections, schistosomiasis).
Several types of fungi (the dermatophytes) infect the non-living keratinous structures (stratum corneum, hair, nails) produced by the skin. Infection is established as long as the parasites’ rate of downward growth into the keratin exceeds the rate of shedding of the keratinous product. When the latter is very slow, as in the case of nails, the infection is more likely to become chronic.
Wounds, abrasions or burns are more common sites of infection. Even a small break in the skin can be a portal of entry if virulent microorganisms such as streptococci, water-borne leptospira or blood-borne hepatitis B virus are present at the site. A few microbes, such as leptospira or the larvae of Ancylostoma and Schistosoma, are able to traverse the unbroken skin by their own activity.
Biting arthropods
Biting arthropods such as mosquitoes, ticks, fleas and sandflies (see Ch. 27) penetrate the skin during feeding and can thus introduce infectious agents or parasites into the body. The arthropod transmits the infection and is an essential part of the life cycle of the microorganism. Sometimes the transmission is mechanical, the microorganism contaminating the mouth parts without multiplying in the arthropod. In most cases, however, the infectious agent multiplies in the arthropod and, as a result of millions of years of adaptation, causes little or no damage to that host. After an incubation period, it appears in the saliva or faeces and is transmitted during a blood feed. The mosquito, for instance, injects saliva directly into host tissues as an anticoagulant, whereas the human body louse defecates as it feeds, and Rickettsia rickettsii, which is present in the faeces, is introduced into the bite wound when the host scratches the affected area.
The conjunctiva
The conjunctiva can be regarded as a specialized area of skin. It is kept clean by the continuous flushing action of tears, aided every few seconds by the windscreen wiper action of the eyelids. Therefore, the microorganisms that infect the normal conjunctiva (chlamydia, gonococci) must have efficient attachment mechanisms (see Ch. 25). Interference with local defences due to decreased lacrimal gland secretion or conjunctival or eyelid damage allows even non-specialist microorganisms to establish themselves. Contaminated fingers, flies, or towels carry infectious material to the conjunctiva, examples including herpes simplex virus infections leading to keratoconjunctivitis or chlamydial infection resulting in trachoma. Antimicrobial substances in tears, including lysozyme, an enzyme, and certain peptides have a defensive role.
Respiratory tract
Some microorganisms can overcome the respiratory tract’s cleansing mechanisms
Air normally contains suspended particles, including smoke, dust and microorganisms. Efficient cleansing mechanisms (see Chs 18 and 19) deal with these constantly inhaled particles. With about 500–1000 microorganisms/m3 inside buildings, and a ventilation rate of 6 l/min at rest, as many as 10 000 microorganisms/day are introduced into the lungs. In the upper or lower respiratory tract, inhaled microorganisms, like other particles, will be trapped in mucus, carried to the back of the throat by ciliary action, and swallowed. Those that invade the normal healthy respiratory tract have developed specific mechanisms to avoid this fate.
Interfering with cleansing mechanisms
The ideal strategy is to attach firmly to the surfaces of cells forming the mucociliary sheet. Specific molecules on the organism (often called adhesins) bind to receptor molecules on the susceptible cell (Fig. 13.2). Examples of such respiratory infections are given in Table 13.2.

Figure 13.2 Influenza virus attachment to ciliated epithelium. Influenza virus particles (V) attached to cilia (C) and microvilli (M). Electron micrograph of thin section from organ culture of guinea pig trachea 1 h after addition of the virus.
(Courtesy of R.E. Dourmashkin.)
Inhibiting ciliary activity is another way of interfering with cleansing mechanisms. This helps invading microorganisms establish themselves in the respiratory tract. B. pertussis, for instance, not only attaches to respiratory epithelial cells, but also interferes with ciliary activity, while other bacteria (Table 13.3) produce various ciliostatic substances of generally unknown nature.
Table 13.3 Interference with ciliary activity in respiratory infections
Cause | Mechanisms | Importance |
---|---|---|
Infecting bacteria interfere with ciliary activity (B. pertussis, H. influenzae, P. aeruginosa, M. pneumoniae) | Production of ciliostatic substances (tracheal cytotoxin from B. pertussis, at least two substances from H. influenzae, at least seven from P. aeruginosa) | + + |
Viral infection | Ciliated cell dysfunction or destruction by influenza, measles | + + + |
Atmospheric pollution (automobiles, cigarette smoking) | Acutely impaired mucociliary function | ? + |
Inhalation of unhumidified air (indwelling tracheal tubes, general anaesthesia) | Acutely impaired mucociliary function | + |
Chronic bronchitis, cystic fibrosis | Chronically impaired mucociliary function | + + + |
Although microbes can actively interfere with ciliary activity (first item), a more general impairment of mucociliary function also acts as a predisposing cause of respiratory infection.
Avoiding destruction by alveolar macrophages
Inhaled microorganisms reaching the alveoli encounter alveolar macrophages, which remove foreign particles and keep the air spaces clean. Most microorganisms are destroyed by these macrophages, but one or two pathogens have learnt either to avoid phagocytosis or to avoid destruction after phagocytosis. Tubercle bacilli, for instance, survive in the macrophages, and respiratory tuberculosis is thought to be initiated in this way. Inhalation of as few as 5–10 bacilli is enough. The vital role of macrophages in antimicrobial defences is dealt with more thoroughly in Chapter 14. Alveolar macrophages are damaged following inhalation of toxic asbestos particles and certain dusts, and this leads to increased susceptibility to respiratory tuberculosis.
Gastrointestinal tract
Some microorganisms can survive the intestine’s defences of acid, mucus and enzymes
Apart from the general flow of intestinal contents, there are no particular cleansing mechanisms in the intestinal tract, except insofar as diarrhea and vomiting can be included in this category. Under normal circumstances, multiplication of resident bacteria is counterbalanced by their continuous passage to the exterior with the rest of the intestinal contents. Ingestion of a small number of non-pathogenic bacteria, followed by growth in the lumen of the alimentary canal, produces only relatively small numbers within 12–18 h, the normal intestinal transit time.
Infecting bacteria must attach themselves to the intestinal epithelium (Table 13.4) if they are to establish themselves and multiply in large numbers. They will then avoid being carried straight down the alimentary canal to be excreted with the rest of the intestinal contents. The concentration of microorganisms in faeces depends on the balance between the production and removal of bacteria in the intestine. Vibrio cholerae (Figs 13.3, 13.4) and rotaviruses both establish specific binding to receptors on the surface of intestinal epithelial cells. For V. cholerae, establishment in surface mucus may be sufficient for infection and pathogenicity. The fact that certain microbes infect mainly the large bowel (Shigella spp.) or small intestine (most salmonellae, rotaviruses) indicates the presence of specific receptor molecules on mucosal cells in these sections of the alimentary canal.

Figure 13.3 Attachment of Vibrio cholerae to brush border of rabbit villus. Thin section electron micrograph (× 10 000).
(Courtesy of E.T. Nelson.)

Figure 13.4 Adherence of Vibrio cholerae to M cells in human ileal mucosa.
(Courtesy of T. Yamamoto.)
Infection sometimes involves more than mere adhesion to the luminal surface of intestinal epithelial cells. Shigella flexneri, for example, can only enter these cells from the basal surface. Initial entry occurs after uptake by M cells, and the bacteria then invade local macrophages. This gives rise to an inflammatory response with an influx of polymorphs, which in turn causes some disruption of the epithelial barrier. Bacteria can now enter on a larger scale from the intestinal lumen and invade epithelial cells from below. The bacteria enhance their entry by exploiting the host’s inflammatory response.
Crude mechanical devices for attachment
Crude mechanical devices are used for the attachment and entry of certain parasitic protozoans and worms. Giardia lamblia, for example, has specific molecules for adhesion to the microvilli of epithelial cells, but also has its own microvillar sucking disk. Hookworms attach to the intestinal mucosa by means of a large mouth capsule containing hooked teeth or cutting plates. Other worms (e.g. Ascaris) maintain their position by ‘bracing’ themselves against peristalsis, while tapeworms adhere closely to the mucus covering the intestinal wall, the anterior hooks and sucker playing a relatively minor role for the largest worms. A number of worms actively penetrate into the mucosa as adults (Trichinella, Trichuris) or traverse the gut wall to enter deeper tissues (e.g. the embryos of Trichinella released from the female worm and the larvae of Echinococcus hatched from ingested eggs).
Mechanisms to counteract mucus, acids, enzymes and bile
Successful intestinal microbes must counteract or resist mucus, acids, enzymes and bile
Mucus protects epithelial cells, perhaps acting as a mechanical barrier to infection. It may contain molecules that bind to microbial adhesins, therefore blocking attachment to host cells. It also contains microbe-specific secretory IgA antibodies, which protect the immune individual against infection. Motile microorganisms (V. cholerae, salmonellae and certain strains of E. coli) can propel themselves through the mucus layer and are therefore more likely to reach epithelial cells to make specific attachments; V. cholerae also produces a mucinase, which probably helps its passage through the mucus. Non-motile microorganisms, in contrast, rely on random and passive transport in the mucus layer.
As might be expected, microorganisms that infect by the intestinal route are often capable of surviving in the presence of acid, proteolytic enzymes and bile. This also applies to microorganisms shed from the body by this route (Table 13.5).
Table 13.5 Microbial properties that aid success in the gastrointestinal tract
Property | Examples | Consequence |
---|---|---|
Specific attachment to intestinal epithelium | Poliovirus, rotavirus, Vibrio cholerae | Microorganism avoids expulsion with other gut contents and can establish infection |
Motility | V. cholerae, certain E. coli strains | Bacteria travel through mucus and are more likely to reach susceptible cell |
Production of mucinase | V. cholerae | May assist transit through mucus (neuraminidase) |
Acid resistance | Mycobacterium tuberculosis | Encourages intestinal tuberculosis (acid labile microorganisms depend on protection in food bolus or in diluting fluid) increased susceptibility in individuals with achlorhydria |
Helicobacter pylori | Establish residence in stomach | |
Enteroviruses (hepatitis A, poliovirus, coxsackieviruses, echoviruses) | Infection and shedding from gastrointestinal tract | |
Bile resistance | Salmonella, Shigella, enteroviruses | Intestinal pathogens |
Enterococcus faecalis, E. coli, Proteus, Pseudomonas | Establish residence | |
Resistance to proteolytic enzymes | Reoviruses in mice | Permits oral infection |
Anaerobic growth | Bacteroides fragilis | Most common resident bacteria in anaerobic environment of colon |
All organisms infecting by the intestinal route must run the gauntlet of acid in the stomach. Helicobacter pylori has evolved a specific defence (Box 13.1). The fact that tubercle bacilli resist acid conditions favours the establishment of intestinal tuberculosis, but most bacteria are acid sensitive and prefer slightly alkaline conditions. For instance, volunteers who drank different doses of V. cholerae contained in 60 mL saline showed a 10 000-fold increase in susceptibility to cholera when 2 g of sodium bicarbonate was given with the bacteria. The minimum disease-producing dose was 108 bacteria without bicarbonate and 104 bacteria with bicarbonate. Similar experiments have been carried out in volunteers with Salmonella typhi, and the minimum infectious dose of 1000–10 000 bacteria was again significantly reduced by the ingestion of sodium bicarbonate. Infective stages of protozoa and worms resist stomach acid because they are protected within cysts or eggs.
Box 13.1 Lessons in microbiology
How to survive stomach acid: the neutralization strategy of Helicobacter pylori.
This bacterium was discovered in 1983, and was shown to be a human pathogen when two courageous doctors, Warren and Marshall in Perth, Western Australia, drank a potion containing the bacteria and developed gastritis. The infection spreads from person to person by the gastro–oral or fecal–oral route, and 150 years ago, nearly all humans were infected as children. Today, in countries with improved hygiene, this is put off until later in life, until at the age of 50 more than half of the population have been infected. The clinical outcome includes peptic ulcer, gastric cancer and gastric mucosa-associated lymphoid tissue (MALT) lymphoma and host, bacterial and environmental factors are thought to be involved. Genetic susceptibility is implicated in both acquiring and clearing H. pylori (HP) infection. After being eaten, the bacteria have a number of strategies resulting in adaptation to the host gastric mucosa having attached by special adhesins to the stomach wall. These include host mimicry leading to evasion of the host response and genetic variation. Most microbes (e.g. V. cholerae) are soon killed at the low pH encountered in the stomach. H. pylori, however, protects itself by releasing large amounts of urease, which acts on local urea to form a tiny cloud of ammonia round the invader. The attached bacteria induce apoptosis in gastric epithelial cells, as well as inflammation, dyspepsia and occasionally a duodenal or gastric ulcer, so that treatment of these ulcers is by antibiotics rather than merely antacids. Some 90% of duodenal ulcers are due to HP infection, and the rest to aspirin or NSAIDs. The bacteria do not invade tissues, and they stay in the stomach for years, causing asymptomatic chronic gastritis. Up to 3% of infected individuals develop chronic active gastritis and progress to intestinal metaplasia which can lead to stomach cancer. H. pylori was the third bacterium for which the entire genome was sequenced; several gene products have been characterized and key developments include understanding the genetic variation of genes encoding the outer membrane proteins and host adaptation.
When the infecting microorganism penetrates the intestinal epithelium (Shigella, S. typhi, hepatitis A and other enteroviruses) the final pathogenicity depends upon:
Microbial exotoxin, endotoxin and protein absorption
Microbial exotoxins, endotoxins and proteins can be absorbed from the intestine on a small scale. Diarrhea generally promotes the uptake of protein, and absorption of protein also takes place more readily in the infant, which in some species needs to absorb antibodies from milk. As well as large molecules, particles the size of viruses can also be taken up from the intestinal lumen. This occurs in certain sites in particular, such as those where Peyer’s patches occur. Peyer’s patches are isolated collections of lymphoid tissue lying immediately below the intestinal epithelium, which in this region is highly specialized, consisting of so-called M cells (see Fig. 13.4). M cells take up particles and foreign proteins and deliver them to underlying immune cells with which they are intimately associated by cytoplasmic processes.
Urogenital tract
Microorganisms gaining entry via the urogenital tract can spread easily from one part of the tract to another
The urogenital tract is a continuum, so microorganisms can spread easily from one part to another, and the distinction between vaginitis and urethritis, or between urethritis and cystitis, is not always easy or necessary (see Chs 20 and 21).
Vaginal defences
The vagina has no particular cleansing mechanisms, and repeated introductions of a contaminated, sometimes pathogen-bearing foreign object (the penis), makes the vagina particularly vulnerable to infection, forming the basis for sexually transmitted diseases (see Ch. 21). Nature has responded by providing additional defences. During reproductive life, the vaginal epithelium contains glycogen due to the action of circulating estrogens, and certain lactobacilli colonize the vagina, metabolizing the glycogen to produce lactic acid. As a result, the normal vaginal pH is about 5.0, which inhibits colonization by all except the lactobacilli and certain other streptococci and diphtheroids. Normal vaginal secretions contain up to 108/mL of these commensal bacteria. If other microorganisms are to colonize and invade they must either have specific mechanisms for attaching to vaginal or cervical mucosa or take advantage of minute local injuries during coitus (genital warts, syphilis) or impaired defences (presence of tampons, estrogen imbalance). These are the microorganisms responsible for sexually transmitted diseases.

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