Gastrointestinal tract infections

22 Gastrointestinal tract infections



Introduction


Ingested pathogens may cause disease confined to the gut or involve other parts of the body


Ingestion of pathogens can cause many different infections. These may be confined to the gastrointestinal tract or are initiated in the gut before spreading to other parts of the body. In this chapter, we consider the important bacterial causes of diarrheal disease and summarize the other bacterial causes of food-associated infection and food poisoning. Viral and parasitic causes of diarrheal disease are discussed, as well as infections acquired via the gastrointestinal tract and causing disease in other body systems, including typhoid and paratyphoid fevers, listeriosis and some forms of viral hepatitis. For clarity, all types of viral hepatitis are included in this chapter, despite the fact that some are transmitted by other routes of infection. Infections of the liver can also result in liver abscesses, and several parasitic infections cause liver disease. Peritonitis and intra-abdominal abscesses can arise from seeding of the abdominal cavity by organisms from the gastrointestinal tract. Several different terms are used to describe infections of the gastrointestinal tract; those in common use are shown in Box 22.1.



A wide range of microbial pathogens is capable of infecting the gastrointestinal tract, and the important bacterial and viral pathogens are listed in Table 22.1. They are acquired by the faecal–oral route, from faecally contaminated food, fluids or fingers.



For an infection to occur, the pathogen must be ingested in sufficient numbers or possess attributes to elude the host defences of the upper gastrointestinal tract and reach the intestine (Fig. 22.1; see also Ch. 13). Here they remain localized and cause disease as a result of multiplication and/or toxin production, or they may invade through the intestinal mucosa to reach the lymphatics or the bloodstream (Fig. 22.2). The damaging effects resulting from infection of the gastrointestinal tract are summarized in Box 22.2.







Diarrheal diseases caused by bacterial or viral infection






Bacterial causes of diarrhea


Escherichia coli


E. coli is one of the most versatile of all bacterial pathogens. Some strains are important members of the normal gut flora in humans and animals (see Ch. 2), whereas others possess virulence factors that enable them to cause infections in the intestinal tract or at other sites, particularly the urinary tract (see Ch. 20). Strains that cause diarrheal disease do so by several distinct pathogenic mechanisms and differ in their epidemiology (Table 22.2).


Table 22.2 Characteristics of Escherichia coli strains causing gastrointestinal infections



























Pathogenic group Epidemiology Laboratory diagnosis*
Enteropathogenic E. coli (EPEC) EPEC strains belong to particular O serotypes
Cause sporadic cases and outbreaks of infection in babies and young children
Importance in adults less clear
Isolate organisms from faeces
Determine serotype of several colonies with polyvalent antisera for known EPEC types
Adhesion to tissue culture cells can be demonstrated by a fluorescence actin staining test
DNA-based assays for detection of attachment (virulence) factors
Enterotoxigenic E. coli (ETEC) Most important bacterial cause of diarrhea in children in resource-poor countries
Most common cause of traveller’s diarrhea
Water contaminated by human or animal sewage may be important in spread
Isolate organisms from faeces
Tests commercially available for immunologic detection of toxins from culture supernatants
Gene probes specific for LT and ST genes available for detection of ETEC in faeces and in food and water samples
Enterohaemorrhagic(verotoxin-producing) E. coli (EHEC) Serotype O157 most important EHEC in human infections
Outbreaks and sporadic cases occur worldwide
Food and unpasteurized milk important in spread
May cause haemolytic-uremic syndrome (HUS)
Isolate organisms from faeces
Proportion of EHEC in fecal sample may be very low (often <  1% of E. coli colonies)
Usually sorbitol non-fermenters
Shiga toxin production and associated genes detected by biological, immunological and nucleic-acid based assays
Enteroinvasive E. coli (EIEC) Important cause of diarrhea in areas of poor hygiene
Infections usually food-borne; no evidence of animal or environmental reservoir
Isolate organisms from faeces
Test for enteroinvasive potential in tissue culture cells or nucleic-acid-based assays for invasion-associated genes
Enteroaggregative E. coli (EAEC)
Diffuse-aggregative E. coli (DAEC)
Characteristic attachment to tissue culture cells
Cause diarrhea in children in resource-poor countries
Role of toxins uncertain
Tissue culture assays for aggregative or diffuse adherence

E. coli is a major cause of gastrointestinal infection, particularly in resource-poor countries and in travellers. There is a range of pathogenic mechanisms within the species, resulting in more or less invasive disease.


* Specialized tests are given in italics. LT, heat-labile enterotoxin; ST, heat-stable enterotoxin.






Enterohaemorrhagic E. coli (EHEC) isolates produce a verotoxin


The verotoxin (i.e. toxic to tissue cultures of ‘vero’ cells) is essentially identical to Shiga (Shigella) toxin. After attachment to the mucosa of the large intestine (by the ‘attaching– effacing’ mechanism also seen in EPEC), the produced toxin has a direct effect on intestinal epithelium, resulting in diarrhea (Table 22.3). EHEC cause haemorrhagic colitis (HC) and haemolytic-uraemic syndrome (HUS). In HC, there is destruction of the mucosa and consequent haemorrhage; this may be followed by HUS. Verotoxin receptors have been identified on renal epithelium and may account for kidney involvement. While there are many serotypes of EHEC, the most common is O157:H7.






EPEC and ETEC are the most important contributors to global incidence of diarrhea, while EHEC is more important in resource-rich countries


The diarrhea produced by E. coli varies from mild to severe, depending upon the strain and the underlying health of the host. ETEC diarrhea in children in resource-poor countries may be clinically indistinguishable from cholera. EIEC and EHEC strains both cause bloody diarrhea (Table 22.3). Following EHEC infection, HUS is characterized by acute renal failure (Fig. 22.5), anaemia and thrombocytopenia, and there may be neurologic complications. HUS is the most common cause of acute renal failure in children in the UK and USA. Although E. coli O157:H7 is the most commonly recognized serotype involved in HUS, E. coli 0104:H4, that had not been reported as causing an outbreak previously, caused a significant outbreak of HUS and bloody diarrhea in 15 countries across Europe in 2011. Over several months starting in May 2011, 860 individuals with HUS and over 3000 with bloody diarrhea were reported in Germany, many of whom had laboratory confirmed E. coli 0104:H4 infection. More than 50 people died and the likely vehicle was sprouted beans imported from the Middle East.




Specific tests are needed to identify strains of pathogenic E. coli


Because E. coli is a member of the normal gastrointestinal flora, specific tests are required to identify strains that may be responsible for diarrheal disease. These are summarized in Table 22.2. Infections are more common in children and are also often travel-associated, and these factors should be considered when samples are received in the laboratory. It is important to note that specialized tests beyond routine stool cultures are required to identify specific diarrhea-associated E. coli types. Such tests are not ordinarily performed with uncomplicated diarrhea, which is usually self-limiting. However, concern regarding EHEC (e.g. bloody diarrhea) has led most laboratories in resource-rich countries to screen for E. coli O157:H7.




Salmonella



Salmonellae are the most common cause of food-associated diarrhea in many resource-rich countries


However, in some countries such as the USA and UK, they have been relegated to second place by Campylobacter. Like E. coli, the salmonellae belong to the family Enterobacteriaceae. Historically, salmonella nomenclature has been somewhat confusing, with more than 2000 serotypes defined on the basis of differences in the cell wall (O) and flagellar (H) antigens (Kauffmann–White scheme). However, DNA hybridization studies indicate that there are only two species, the most important of which, for human infection, is Salmonella enterica. To simplify discussion and comparison, past convention has been to replace this species name with the serotype designation. While technically incorrect (the serotype is not a species), this practice is helpful when discussing interrelationships between different isolates, e.g. in epidemiologic analysis when tracing the source of an outbreak. This convention is thus followed here to maintain continuity with other scientific literature.


All salmonellae except for Salmonella typhi and S. paratyphi are found in animals as well as humans. There is a large animal reservoir of infection, which is transmitted to humans via contaminated food, especially poultry and dairy products (Fig. 22.6). Water-borne infection is less frequent. Salmonella infection is also transmitted from person to person, and secondary spread can therefore occur, for example, within a family after one member has become infected after consuming contaminated food.




Salmonellae are almost always acquired orally in food or drink that is contaminated


Diarrhea is produced as a result of invasion by the salmonellae of epithelial cells in the terminal portion of the small intestine (Fig. 22.7). Initial entry is probably through uptake by M cells (the ‘antigenic samplers’ of the bowel) with subsequent spread to epithelial cells. A similar route of invasion occurs in Shigella, Yersinia and reovirus infections. The bacteria migrate to the lamina propria layer of the ileocaecal region, where their multiplication stimulates an inflammatory response, which both confines the infection to the gastrointestinal tract and mediates the release of prostaglandins. These in turn activate cyclic adenosine monophosphate (cAMP) and fluid secretion, resulting in diarrhea.



Species of Salmonella that normally cause diarrhea (e.g. S. enteritidis, S. choleraesuis) may become invasive in patients with particular predispositions (e.g. children, immunocompromised patients or those with sickle cell anaemia). The organisms are not contained within the gastrointestinal tract, but invade the body to cause septicaemia; consequently, many organs become seeded with salmonellae, sometimes leading to osteomyelitis, pneumonia or meningitis.


In the vast majority of cases, Salmonella spp. cause an acute but self-limiting diarrhea, though in the young and the elderly the symptoms may be more severe. Vomiting is also common with enterocolitis, while fever is usually a sign of invasive disease (Table 22.3). S. typhi and S. paratyphi invade the body from the gastrointestinal tract to cause systemic illness and are discussed in a later section.






Campylobacter infections are among the most common causes of diarrhea


Campylobacter spp. are curved or S-shaped Gram-negative rods (Fig. 22.8). They have long been known to cause diarrheal disease in animals, but are also one of the most common causes of diarrhea in humans. The delay in recognizing the importance of these organisms was due to their cultural requirements, which differ from those of the enterobacteria as they are microaerophilic and thermophilic (growing well at 42°C); they do not therefore grow on the media used for isolating E. coli and salmonellae. Several species of the genus Campylobacter are associated with human disease, but Campylobacter jejuni is by far the most common. Helicobacter pylori, previously classified as Campylobacter pylori, is an important cause of gastritis and gastric ulcers (see below).



As with salmonellae, there is a large animal reservoir of Campylobacter in cattle, sheep, rodents, poultry and wild birds. Infections are acquired by consumption of contaminated food, especially poultry, milk or water. Studies have shown an association between infection and consumption of milk from bottles with tops that have been pecked by wild birds. Household pets such as dogs and cats can become infected and provide a source for human infection, particularly for young children. Person-to-person spread by the faecal–oral route is rare, as is transmission from food handlers.






Cholera


Cholera is an acute infection of the gastrointestinal tract caused by the comma-shaped Gram-negative bacterium V. cholerae (Fig. 22.10). The disease has a long history characterized by epidemics and pandemics. The last cases of cholera acquired in the UK were in the nineteenth century following the introduction of the bacterium by sailors arriving from Europe, and in 1849 Snow published his historic essay On the Mode of Communication of Cholera.





V. cholerae serotypes are based on somatic (O) antigens


Serotype O1 is the most important and is further divided into two biotypes: classical and El Tor (Fig. 22.11). The El Tor biotype, named after the quarantine camp where it was first isolated from pilgrims returning from Mecca, differs from classical V. cholerae in several ways. In particular, it causes only mild diarrhea and has a higher ratio of carriers to cases than classic cholera; carriage is also more prolonged, and the organisms survive better in the environment. The El Tor biotype, which was responsible for the seventh pandemic, has now spread throughout the world and has largely displaced the classic biotype.



In 1992, a new non-O1 strain (O139) arose in south India. It spread rapidly, infected O1-immune individuals, caused epidemics, and was the eighth pandemic strain of cholera. V. cholerae O139 appeared to have originated from the El Tor O1 biotype when the latter acquired a new O (capsular) antigen by horizontal gene transfer from a non-O1 strain. This provided the recipient strain with a selective advantage in a region where a large part of the population was immune to O1 strains.


Other species of Vibrio cause a variety of infections in humans (Fig. 22.11). V. parahaemolyticus is another cause of diarrheal disease, but this is usually much less severe than cholera (see below).



The symptoms of cholera are caused by an enterotoxin


The symptoms of cholera are entirely due to the production of an enterotoxin in the gastrointestinal tract (see Ch. 17). However, the organism requires additional virulence factors to enable it to survive the host defences and adhere to the intestinal mucosa. These are illustrated in Figure 22.12 (see also Ch. 13).



The clinical features of cholera are summarized in Table 22.3. The severe watery non-bloody diarrhea is known as rice water stool because of its appearance (Fig. 22.13) and can result in the loss of 1    L of fluid every hour. It is this fluid loss and the consequent electrolyte imbalance that results in marked dehydration, metabolic acidosis (loss of bicarbonate), hypokalaemia (potassium loss) and hypovolaemic shock resulting in cardiac failure. Untreated, the mortality from cholera is 40–60%; rapidly instituted fluid and electrolyte replacement reduces the mortality to <    1%.







Shigellosis




Shigella diarrhea is usually watery at first, but later contains mucus and blood


Shigellae attach to, and invade, the mucosal epithelium of the distal ileum and colon, causing inflammation and ulceration (Fig. 22.14). However, they rarely invade through the gut wall to the bloodstream. S. dysenteriae produce a (Shiga) toxin similar to that associated with enterohaemorrhagic E. coli (EHEC; see above), which can cause damage to the intestinal epithelium and glomerular endothelial cells, the latter leading to kidney failure (haemolytic-uraemic syndrome, HUS; see above).



The main features of shigella infection are summarized in Table 22.3. Diarrhea is usually watery initially, but later contains mucus and blood. Lower abdominal cramps can be severe. The disease is usually self-limiting, but dehydration can occur, especially in the young and elderly. Complications can be associated with malnutrition (see above).





V. parahaemolyticus and Yersinia enterocolitica are food-borne Gram-negative causes of diarrhea


V. parahaemolyticus is a halophilic (salt-loving) vibrio that contaminates seafood and fish. If these foods are consumed uncooked, diarrheal disease can result. The mechanism of pathogenesis is still unclear. Most strains associated with infection are haemolytic due to production of a heat-stable cytotoxin and have been shown to invade intestinal cells (in contrast to V. cholerae, which is non-invasive and cholera toxin, which is not cytotoxic).


The clinical features of infection are summarized in Table 22.3. The methods used for the laboratory diagnosis of V. parahaemolyticus infection are given in the Appendix (e.g. special media for cultivation). Prevention of infection depends upon cooking fish and seafood properly.


Yersinia enterocolitica is a member of the Enterobacteriaceae and is a cause of food-associated infection especially among infants and particularly in colder parts of the world. The reason for this geographic distribution is unknown, but it has been speculated that it is because the organism prefers to grow at temperatures of 22–25    °C. Y. enterocolitica is found in a variety of animal hosts including rodents, rabbits, pigs, sheep, cattle, horses and domestic pets. Transmission to humans from household dogs has been reported. The organism survives and multiplies, albeit more slowly, at refrigeration temperatures (48    °C) and has been implicated in outbreaks of infection associated with contaminated milk as well as other foods.


The mechanism of pathogenesis is unknown, but the clinical features of the disease result from invasion of the terminal ileum, necrosis in Peyer’s patches and an associated inflammation of the mesenteric lymph nodes (Fig. 22.15). The presentation, with enterocolitis and often mesenteric adenitis, can easily be confused with acute appendicitis, particularly in children. The clinical features are summarized in Table 22.3. The laboratory diagnosis is outlined in the Appendix. As with V. parahaemolyticus, an indication of a suspicion of yersinia infection is useful so that the laboratory staff can process the specimen appropriately.




Clostridium perfringens and Bacillus cereus are spore-forming Gram-positive causes of diarrhea


The Gram-negative organisms described in the previous sections invade the intestinal mucosa or produce enterotoxins, which cause diarrhea. None of these organisms produces spores. Two Gram-positive species are important causes of diarrheal disease, particularly in association with spore-contaminated food. These are Clostridium perfringens and Bacillus cereus.


Cl. perfringens is associated with diarrheal diseases in different circumstances, and the pathogenesis is summarized in Figure 22.16:




The clinical features of the common type of infection are shown in Table 22.3. The laboratory investigation of suspected Cl. perfringens infection is outlined in the Appendix. The organism is an anaerobe and grows readily on routine laboratory media. Enterotoxin production can be demonstrated by a latex agglutination method.


Antibacterial treatment of Cl. perfringens diarrhea is rarely required. Prevention depends on thorough reheating of food before serving, or preferably avoiding cooking food too long before consumption.


Cl. perfringens is also an important cause of wound and soft tissue infections, as described in Chapter 26.


Bacillus cereus spores and vegetative cells contaminate many foods, and food-associated infection takes one of two forms:



Two different toxins are involved, as illustrated in Figure 22.17. The clinical features of the infections are summarized in Table 22.3. Laboratory confirmation of the diagnosis requires specific media as described in the Appendix. The emetic type of disease may be difficult to assign to B. cereus unless the incriminated food is cultured.



As with Cl. perfringens, prevention of B. cereus food-associated infection depends upon proper cooking and rapid consumption of food. Specific antibacterial treatment is not indicated.



Antibiotic-associated diarrhea – Clostridium difficile


Clostridium difficile infection is the most commonly diagnosed bacterial cause of hospital-acquired infectious diarrhea in resource-rich countries.



Treatment with broad-spectrum antibiotics can be complicated by antibiotic associated Cl. difficile diarrhea


All the infections described so far arise from the ingestion of organisms or their toxins. However, diarrhea can also arise from disruption of the normal gut flora. Even in the early days of antibiotic use, it was recognized that these agents affected the normal flora of the body as well as attacking the pathogens. For example, orally administered tetracycline disrupts the normal gut flora, and patients sometimes become recolonized not with the usual facultative Gram-negative anaerobes but with Staphylococcus aureus, causing enterocolitis, or with yeasts such as Candida. Soon after clindamycin was introduced for therapeutic use, it was found to be associated with severe diarrhea in which the colonic mucosa became covered with a characteristic fibrinous pseudomembrane (pseudomembranous colitis; Fig. 22.18). However, clindamycin is not the cause of the condition; it merely inhibits the normal gut flora and allows Cl. difficile to multiply. This organism is commonly found in the gut of children and to a lesser extent in adults, but can also be acquired from other patients in hospital by cross-infection. Cl. difficile is a spore former and survives in the environment as it is resistant to heat and acid, for example. The spores contaminate the environment and become vegetative bacteria that can be transmitted between patients on the wards. In common with other clostridia, Cl. difficile produces exotoxins, two of which have been characterized: one is a cytotoxin and the other an enterotoxin that cause haemostasis and tissue necrosis in the colon, resulting in diarrhea.



Toxin A and toxin B are encoded within a short chromosomal segment carried by pathogenic strains of Cl. difficile, referred to as the pathogenicity locus, as is a regulatory gene tcdC. There is also a binary toxin encoded by two chromosomal genes separate from the chromosomal pathogenicity locus. One gene mediates cell surface binding and intracellular translocation and the other causes cell death.


An emergent epidemic Cl. difficile variant strain called Cl. difficile 027 has been shown to produce more toxin A and toxin B than most hospital strains. A study reported that the binary toxin genes were associated with partial deletions in the tcdC gene that down-regulates the toxin A and B genes, and that severe Cl. difficile-associated diarrhea was significantly associated with them. Finally, Cl. difficile 027 was associated with much higher levels of toxins A and B than in other strains. This strain detected in the USA, Canada, the UK and other parts of Europe is not only highly transmissible but causes more severe disease in individuals in both hospitals and the community. It has been associated with higher case fatality rates, with some infected individuals requiring a colectomy and intensive care unit support, and has also been shown to be more resistant to the fluoroquinolone antibiotics than other strains.


Although initially associated with clindamycin, Cl. difficile diarrhea has since been shown to follow therapy with many other broad-spectrum antibiotics; hence the term antibiotic-associated diarrhea or colitis. The infection is often severe and may require treatment with the anti-anaerobic agent metronidazole, or with oral vancomycin. However, the emergence of vancomycin-resistant enterococci, probably originating in the gut flora, has led to the recommendation that oral vancomycin be avoided wherever possible (see Ch. 33).

Only gold members can continue reading. Log In or Register to continue

Stay updated, free articles. Join our Telegram channel

Jul 9, 2017 | Posted by in MICROBIOLOGY | Comments Off on Gastrointestinal tract infections

Full access? Get Clinical Tree

Get Clinical Tree app for offline access