Polymorphisms and Trauma Precision Medicine


Gene

Chrome location

Variation

Population

Study size

Fuctional effects

Associated clinical phenotype

References

TLR1

4p14

−7202A/G(rs5743551)

Whites

1498
 
Higher mortality with sepsis after traumatic injury

[11]

742A/G(Asn248Ser) (rs4833095),

Whites

1498
 
Higher mortality in Gram positive sepsis

[11]

TLR2

4q32

−16934 T/A(rs4696480)

Mixed Ethnic

219
 
Higher risk of a gram-positive infection and SIRS

[71]

R753Q(rs5743708)

Mixed Ethnic

68
 
Higher sepsis morbidity rate

[35]

19216T/C(rs3804099)

Han Chinese

410

Cytokine production

Higher sepsis morbidity rate and MOD scores

[14]

TLR4

9q33.1

−2242T/C

Han Chinese

303

Cytokine produciton and promoter activity

Higher sepsis morbidity rate and MOD scores

[15]

896 A/G

Whites

598
 
Decreased risk of complicated sepsis

[72]

Mixed Ethnic

159
 
Increased risk for severe sepsis following burn trauma

[31]

Mixed Ethnic

228
 
Increased risk for severe sepsis.

[40]

11367G/C

Han Chinese

132

mRNA stability and TLR4 expression

Decreased sepsis morbidity rate and MOD scores

[16, 17]

TLR9

3p21.3

−1486T/C (rs187084)

Han Chinese

557

Cytokine production

Higher sepsis morbidity rate

[18]

6577T/C (rs352162)

Han Chinese

557

Cytokine production

Higher sepsis morbidity rate and MOD scores

[18]

MD-2

8q21.11

−1625C/G (rs11465996)

Han Chinese

105/726

MD-2 promoter activity,MD-2 expression

Higher sepsis morbidity rate and MOD scores

[19, 73]

CD14

5q31.1

−159C/T (rs2569190)

Han Chinese

105

CD14 promoter activity

Increased sepsis morbidity rate and MOD scores

[20]

Han Chinese

106
 
Increased MOD scores

[74]

Mixed Ethnic

228/149/233
 
Decreased risk for severe sepsis and mortality

[40, 48, 75]

−1145G/A (rs2569191)

Han Chinese

105

CD14 promoter activity

Decreased sepsis morbidity rate and MOD scores

[20]

Han Chinese

106
 
Increased MOD scores

[74]

LBP

20q11.23

Pro436Leu (rs2232618)

Han Chinese

454/1215

Higher median basal serum LBP levels

Higher susceptibility to sepsis and MOD

[23]

RAGE

6p21.3

−429T/C (rs1800625)

Han Chinese

728

Decreased production of TNFα and promoter activities

Decreased sepsis morbidity rate and MOD scores

[24]

NLRP3

1q44

−1017G/A (rs2027432)

Han Chinese

718

Increased production of IL-1βand transcription activity

Increased MOD scores

[25]

5134A/G (rs12048215)

Han Chinese

718

Decreased production of IL-1β

Decreased sepsis morbidity rate

[25]

hGR/NR3C1

5q31

BclI C/G (rs41423247)

Han Chinese

95
  
[76]



MD-2, CD14 and LPS-binding protein (LBP) are the co-molecules involving in TLR4 sensing. A polymorphism in MD-2 promoter (MD2 −1625C/G) was reported to increase the promoter activity and expression level of MD2 in vitro. Patients carrying −1625G allele are more likely to develop sepsis and MODS after major trauma [19]. Although the results of CD14 researches are not consistent, our study found a synergistic effect of −159C/T and −1145G/A on the development of post traumatic complications [20]. The researches regarding LBP SNPs and sepsis also got conflicting results [21, 22]. However, we identified that people carrying LBP 436Leu had an increased risk of infection in Chinese population [23].

Besides of classical receptors involved in TLR4 pathways, several other PPRs have been also investigated. RAGE −429T/C polymorphism (rs1800625) was shown to be related to sepsis and MODS in severe trauma patients [24]. Compared with those carrying T allele, patients carrying C allele had a significantly lower sepsis morbidity rate and MOD scores. Rs2027432 in NLRP3, a member of NOD-like receptor family, was found to be significantly associated with higher risk of MODS. In addition, the NLRP3 5134A > G (rs12048215) polymorphism was found to be significantly associated with a lower sepsis morbidity rate. Moreover, the rs2027432 polymorphism was significantly associated with higher IL-1β levels [25].



2.2 Signal Transducing Adaptor Proteins


Interleukin -1 receptor-associated kinases (IRAKs) are a family of molecules, which play an important role in the regulation of natural immune system, as mediators of TLR/IL1R superfamily signaling. There are four IRAK genes found in the human genome (IRAK1, IRAK2, IRAK3 or IRAKM, and IRAK4). All of them have the similar domain structures, including a praline/serine/threonine-rich (PEST) kinase domain (KD) and an conserved N-terminal death domain (DD), which is important for dimerization and interaction with MyD88. Except for IRAK4, the other three mebers in IRAK famil all contain a C-terminal domain, which is required for TRAF6 binding and activation [26].

The relationship between IRAK1, IRAK3 and outcomes of major trauma patients were investigated (Table 2). One MODS -related polymorphism in IRAK1 gene was found out. IRAK1 encodes the interleukin-1 receptor-associated kinase 1, a serine/threonine kinases belongs to the Toll/IL-1 receptor (TIR) signaling family and a key regulator of NF-kappa B pathway. Sperry et al. [27] studied a cohort of 321 patients with a median ISS of 16 for the 1595T/C substitution (rs1059703) in exon 12 of IRAK1 which results in a non-synonymous mutation (p.L532S). They found patients carrying this polymorphism have an eightfold and 11-fold risk of MOF and death, respectively. Specially,this phenomenon is most prominent in males, whereas females carrying heterozygous are more likely to have a worse outcome. Meyer et al. [28] genotyped 25 candidate genes for 474 critically ill trauma patients with acute lung injury (ALI) in a prospective cohort study using the IBC chip. IRAK3 was found to be associated with ALI in patients from African descent but not in European ancestry trauma subjects.


Table 2
Effects of signal transduction gene polymorphisms on the outcomes of trauma patients

















































Gene

Chrome location

Variation

Population

Study size

Fuctional effects

Associated clinical phenotype

References

IRAK-1

Xq28

1595 T/C (rs1059703)

Mixed Ethnic

321
 
Greater risk of MOF and mortality

[27]

IRAK-3

12q14

15SNPs

African ancestry and European ancestry

474
 
Greater risk of ALI in African descent

[28]

REL

2p13-p12

rs842647 G/A

Chinese

753

Lower TNF-α production

Lower sepsis morbidity rate and MOD scores

[30]

Nuclear factor-κB (NF-κB) family contains five members, p50, p52, p65 (RelA), RelB and c-Rel. The complexity of NF-κB can be activated by either canonical or non-canonical pathways and plays an essential role in inflammation [29]. More and more evidence indicates that polymorphisms in the NF-κB family genes may affect the magnitude of proinflammatory response. Our research investigated the relationship between Tag SNPs selected from NF-κB family genes, including NFKB1, NFKB2, RELA, RELB and REL, and outcomes in a Chinese trauma cohort [30]. One SNP, rs842647 in REL gene, was found to be associated with lower sepsis morbidity and MOD scores. Patients carrying rs842647 A allele had lower plasma TNF-α levels.


2.3 Inflammatory Cytokines


In the course of sepsis, there is a comprehensive and systemic activation of immune responses. The markedly imbalanced cytokine response accompanying with sepsis forms a kind of ‘cytokine storm’, which converts normally beneficial responses of anti-inflammation into excessive, and finally causes damage to normal tissues. Various cytokines released from immune cells work as effectors and play an important role in the inflammatory response to infection. Thus, a number of polymorphisms in cytokine genes have been investigated using association studies (Table 3).


Table 3
Effects of cytokine gene polymorphisms on the outcomes of trauma patients


















































































































































































































Gene

Chrome location

Variation

Population

Study size

Fuctional effects

Associated clinical phenotype

References

IL-1α

2q13

−889C/T (rs1800587)

Han Chinese

308

The lower serum levels of Il-1α

Higher sepsis morbidity rate

[77]

IL-1β

2q14

−1470G/C.

Han Chinese

308/238

Cytokine production

Lower sepsis morbidity rate

[77, 78]

−511T/C (rs16944)

Han Chinese

308/238

Cytokine production

Higher sepsis morbidity rate

[77, 78]

Caucasian

100
   
[79]

Greek

183
   
[80]

−31C/T (rs1143627)

Mixed Ethnic

159/228/149
   
[31, 40, 48]

Han Chinese

308/238

Cytokine production

Higher sepsis morbidity rate

[77, 78]

3953C/T (rs1143634)

Caucasian

100
   
[79]

Unknown

97
   
[41]

IL-1RN

2q14.2

intron 2, VNTR

Greek

183
   
[80]

rs315952

European

1002
 
Decreased risk of ARDS

[81]

IL-4

5q31

−589T/C (rs2243250)

Han Chinese

308

Higher plasma IL-4 and lower interferon-gamma production

Increased susceptibility of sepsis

[77, 82]

IL-6

7p21

−174G/C

Mixed Ethnic

68
   
[35]

Mixed Ethnic

159/228/149
   
[31, 40, 48]

African ancestry and European ancestry

474
   
[28]

Caucasian

100
   
[79]

Unknown

71
   
[83]

Caucasian

57
   
[84]

Unknown

47
   
[85]

Unknown

77
 
Increased mortality after acute severe TBI

[86]

−572C/G (rs1800796)

Han Chinese

105/308

Reduced transcriptional activity of the IL-6 promoter, IL-6 production from leukocytes

Lower risk of sepsis

[42, 77]

Unknown

47
   
[85]

−597G/A (rs1800797)

Han Chinese

105
   
[42]

IL-8

4q13

−251A/T (rs4073)

Unknown

47
   
[85]

IL-10

1q31-32

−1082G/A (rs1800896)

Mixed Ethnic

68

Lower interleukin-10 production

Lower risk of sepsis

[35]

Unknown

71

Lower interleukin-10 production
 
[83]

Han Chinese

308

Lower lipopolysaccharide-induced IL-10 production

Higher sepsis morbidity rate and MOD score

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Oct 26, 2017 | Posted by in GENERAL SURGERY | Comments Off on Polymorphisms and Trauma Precision Medicine

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