Gene
Chrome location
Variation
Population
Study size
Fuctional effects
Associated clinical phenotype
References
TLR1
4p14
−7202A/G(rs5743551)
Whites
1498
Higher mortality with sepsis after traumatic injury
[11]
742A/G(Asn248Ser) (rs4833095),
Whites
1498
Higher mortality in Gram positive sepsis
[11]
TLR2
4q32
−16934 T/A(rs4696480)
Mixed Ethnic
219
Higher risk of a gram-positive infection and SIRS
[71]
R753Q(rs5743708)
Mixed Ethnic
68
Higher sepsis morbidity rate
[35]
19216T/C(rs3804099)
Han Chinese
410
Cytokine production
Higher sepsis morbidity rate and MOD scores
[14]
TLR4
9q33.1
−2242T/C
Han Chinese
303
Cytokine produciton and promoter activity
Higher sepsis morbidity rate and MOD scores
[15]
896 A/G
Whites
598
Decreased risk of complicated sepsis
[72]
Mixed Ethnic
159
Increased risk for severe sepsis following burn trauma
[31]
Mixed Ethnic
228
Increased risk for severe sepsis.
[40]
11367G/C
Han Chinese
132
mRNA stability and TLR4 expression
Decreased sepsis morbidity rate and MOD scores
TLR9
3p21.3
−1486T/C (rs187084)
Han Chinese
557
Cytokine production
Higher sepsis morbidity rate
[18]
6577T/C (rs352162)
Han Chinese
557
Cytokine production
Higher sepsis morbidity rate and MOD scores
[18]
MD-2
8q21.11
−1625C/G (rs11465996)
Han Chinese
105/726
MD-2 promoter activity,MD-2 expression
Higher sepsis morbidity rate and MOD scores
CD14
5q31.1
−159C/T (rs2569190)
Han Chinese
105
CD14 promoter activity
Increased sepsis morbidity rate and MOD scores
[20]
Han Chinese
106
Increased MOD scores
[74]
Mixed Ethnic
228/149/233
Decreased risk for severe sepsis and mortality
−1145G/A (rs2569191)
Han Chinese
105
CD14 promoter activity
Decreased sepsis morbidity rate and MOD scores
[20]
Han Chinese
106
Increased MOD scores
[74]
LBP
20q11.23
Pro436Leu (rs2232618)
Han Chinese
454/1215
Higher median basal serum LBP levels
Higher susceptibility to sepsis and MOD
[23]
RAGE
6p21.3
−429T/C (rs1800625)
Han Chinese
728
Decreased production of TNFα and promoter activities
Decreased sepsis morbidity rate and MOD scores
[24]
NLRP3
1q44
−1017G/A (rs2027432)
Han Chinese
718
Increased production of IL-1βand transcription activity
Increased MOD scores
[25]
5134A/G (rs12048215)
Han Chinese
718
Decreased production of IL-1β
Decreased sepsis morbidity rate
[25]
hGR/NR3C1
5q31
BclI C/G (rs41423247)
Han Chinese
95
[76]
MD-2, CD14 and LPS-binding protein (LBP) are the co-molecules involving in TLR4 sensing. A polymorphism in MD-2 promoter (MD2 −1625C/G) was reported to increase the promoter activity and expression level of MD2 in vitro. Patients carrying −1625G allele are more likely to develop sepsis and MODS after major trauma [19]. Although the results of CD14 researches are not consistent, our study found a synergistic effect of −159C/T and −1145G/A on the development of post traumatic complications [20]. The researches regarding LBP SNPs and sepsis also got conflicting results [21, 22]. However, we identified that people carrying LBP 436Leu had an increased risk of infection in Chinese population [23].
Besides of classical receptors involved in TLR4 pathways, several other PPRs have been also investigated. RAGE −429T/C polymorphism (rs1800625) was shown to be related to sepsis and MODS in severe trauma patients [24]. Compared with those carrying T allele, patients carrying C allele had a significantly lower sepsis morbidity rate and MOD scores. Rs2027432 in NLRP3, a member of NOD-like receptor family, was found to be significantly associated with higher risk of MODS. In addition, the NLRP3 5134A > G (rs12048215) polymorphism was found to be significantly associated with a lower sepsis morbidity rate. Moreover, the rs2027432 polymorphism was significantly associated with higher IL-1β levels [25].
2.2 Signal Transducing Adaptor Proteins
Interleukin -1 receptor-associated kinases (IRAKs) are a family of molecules, which play an important role in the regulation of natural immune system, as mediators of TLR/IL1R superfamily signaling. There are four IRAK genes found in the human genome (IRAK1, IRAK2, IRAK3 or IRAKM, and IRAK4). All of them have the similar domain structures, including a praline/serine/threonine-rich (PEST) kinase domain (KD) and an conserved N-terminal death domain (DD), which is important for dimerization and interaction with MyD88. Except for IRAK4, the other three mebers in IRAK famil all contain a C-terminal domain, which is required for TRAF6 binding and activation [26].
The relationship between IRAK1, IRAK3 and outcomes of major trauma patients were investigated (Table 2). One MODS -related polymorphism in IRAK1 gene was found out. IRAK1 encodes the interleukin-1 receptor-associated kinase 1, a serine/threonine kinases belongs to the Toll/IL-1 receptor (TIR) signaling family and a key regulator of NF-kappa B pathway. Sperry et al. [27] studied a cohort of 321 patients with a median ISS of 16 for the 1595T/C substitution (rs1059703) in exon 12 of IRAK1 which results in a non-synonymous mutation (p.L532S). They found patients carrying this polymorphism have an eightfold and 11-fold risk of MOF and death, respectively. Specially,this phenomenon is most prominent in males, whereas females carrying heterozygous are more likely to have a worse outcome. Meyer et al. [28] genotyped 25 candidate genes for 474 critically ill trauma patients with acute lung injury (ALI) in a prospective cohort study using the IBC chip. IRAK3 was found to be associated with ALI in patients from African descent but not in European ancestry trauma subjects.
Table 2
Effects of signal transduction gene polymorphisms on the outcomes of trauma patients
Gene | Chrome location | Variation | Population | Study size | Fuctional effects | Associated clinical phenotype | References |
---|---|---|---|---|---|---|---|
IRAK-1 | Xq28 | 1595 T/C (rs1059703) | Mixed Ethnic | 321 | Greater risk of MOF and mortality | [27] | |
IRAK-3 | 12q14 | 15SNPs | African ancestry and European ancestry | 474 | Greater risk of ALI in African descent | [28] | |
REL | 2p13-p12 | rs842647 G/A | Chinese | 753 | Lower TNF-α production | Lower sepsis morbidity rate and MOD scores | [30] |
Nuclear factor-κB (NF-κB) family contains five members, p50, p52, p65 (RelA), RelB and c-Rel. The complexity of NF-κB can be activated by either canonical or non-canonical pathways and plays an essential role in inflammation [29]. More and more evidence indicates that polymorphisms in the NF-κB family genes may affect the magnitude of proinflammatory response. Our research investigated the relationship between Tag SNPs selected from NF-κB family genes, including NFKB1, NFKB2, RELA, RELB and REL, and outcomes in a Chinese trauma cohort [30]. One SNP, rs842647 in REL gene, was found to be associated with lower sepsis morbidity and MOD scores. Patients carrying rs842647 A allele had lower plasma TNF-α levels.
2.3 Inflammatory Cytokines
In the course of sepsis, there is a comprehensive and systemic activation of immune responses. The markedly imbalanced cytokine response accompanying with sepsis forms a kind of ‘cytokine storm’, which converts normally beneficial responses of anti-inflammation into excessive, and finally causes damage to normal tissues. Various cytokines released from immune cells work as effectors and play an important role in the inflammatory response to infection. Thus, a number of polymorphisms in cytokine genes have been investigated using association studies (Table 3).
Table 3
Effects of cytokine gene polymorphisms on the outcomes of trauma patients
Gene | Chrome location | Variation | Population | Study size | Fuctional effects | Associated clinical phenotype | References |
---|---|---|---|---|---|---|---|
IL-1α | 2q13 | −889C/T (rs1800587) | Han Chinese | 308 | The lower serum levels of Il-1α | Higher sepsis morbidity rate | [77] |
IL-1β | 2q14 | −1470G/C. | Han Chinese | 308/238 | Cytokine production | Lower sepsis morbidity rate | |
−511T/C (rs16944) | Han Chinese | 308/238 | Cytokine production | Higher sepsis morbidity rate | |||
Caucasian | 100 | [79] | |||||
Greek | 183 | [80] | |||||
−31C/T (rs1143627) | Mixed Ethnic | 159/228/149 | |||||
Han Chinese | 308/238 | Cytokine production | Higher sepsis morbidity rate | ||||
3953C/T (rs1143634) | Caucasian | 100 | [79] | ||||
Unknown | 97 | [41] | |||||
IL-1RN | 2q14.2 | intron 2, VNTR | Greek | 183 | [80] | ||
rs315952 | European | 1002 | Decreased risk of ARDS | [81] | |||
IL-4 | 5q31 | −589T/C (rs2243250) | Han Chinese | 308 | Higher plasma IL-4 and lower interferon-gamma production | Increased susceptibility of sepsis | |
IL-6 | 7p21 | −174G/C | Mixed Ethnic | 68 | [35] | ||
Mixed Ethnic | 159/228/149 | ||||||
African ancestry and European ancestry | 474 | [28] | |||||
Caucasian | 100 | [79] | |||||
Unknown | 71 | [83] | |||||
Caucasian | 57 | [84] | |||||
Unknown | 47 | [85] | |||||
Unknown | 77 | Increased mortality after acute severe TBI | [86] | ||||
−572C/G (rs1800796) | Han Chinese | 105/308 | Reduced transcriptional activity of the IL-6 promoter, IL-6 production from leukocytes | Lower risk of sepsis | |||
Unknown | 47 | [85] | |||||
−597G/A (rs1800797) | Han Chinese | 105 | [42] | ||||
IL-8 | 4q13 | −251A/T (rs4073) | Unknown | 47 | [85] | ||
IL-10 | 1q31-32 | −1082G/A (rs1800896) | Mixed Ethnic | 68 | Lower interleukin-10 production | Lower risk of sepsis | [35] |
Unknown | 71 | Lower interleukin-10 production | [83] | ||||
Han Chinese | 308 | Lower lipopolysaccharide-induced IL-10 production | Higher sepsis morbidity rate and MOD score
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