Respiratory Virus Infections
Respiratory viruses cause infections in approximately 19% of HSCT patients each season (generally considered to be from November to May in the Northern Hemisphere). Respiratory syncytial virus (RSV), influenza A and B viruses, parainfluenza virus, adenovirus, picornaviruses, coronavirus, human metapneumovirus, and rhinovirus have been described as agents that affect HSCT patients
(138,
139). These viruses commonly cause upper respiratory tract infections and can lead to serious lower respiratory tract infections associated with significant morbidity and mortality in this population. Adenovirus can lead to disseminated visceral syndromes
(140). Suspicion for respiratory virus infection should be maintained throughout the year, because parainfluenza and adenovirus occur yearround. While respiratory viruses are frequently acquired in the community, hospital transmission is well described. One group reported that 48% of these types of infections were acquired within the hospital
(138). A study of HSCT patients with respiratory symptoms who had cultures and direct fluorescent antibody examination of nasopharyngeal wash/throat specimens demonstrated that the most common community-acquired respiratory agent was RSV (35%), followed by parainfluenza virus (30%), rhinovirus (25%), and influenza (11%)
(141). Adenovirus was not included in the study because of the difficulty in differentiating new infection from reactivation of latent disease. Patients with radiographic evidence of pneumonia underwent bronchoalveolar lavage; 49% of patients with RSV had pneumonia and 22% of patients with parainfluenza had pneumonia, but pneumonia due to influenza and rhinovirus was uncommon (<10% of patients). In contrast, a more recent study reported the results of direct immunofluorescence assays performed on respiratory specimens from 179 HSCT patients who had 392 episodes of upper respiratory illness
(142). Of the 68 (38%) in whom virus was detected, respiratory syncytial virus was detected in 18 patients (26.4%), influenza A or B in 28 (41.2%), and parain-fluenza in 7 (10.3%). Fourteen patients (20.6%) had multiple viruses isolated. RSV pneumonia developed in 55.5% of the patients with RSV upper respiratory infections. One of the 15 patients (6.7%) with RSV pneumonia died. Influenza pneumonia was diagnosed in three patients (7.3%). These investigators report a lower mortality than previously reported.
HSCT recipients or candidates who have symptoms of respiratory tract infection should be placed on Droplet Precautions and sometimes on both Droplet and Contact Precautions to avoid transmitting to other patients (
127,
143). Optimal isolation precautions should be modified after the causative agent is identified and the epidemiology understood (
143). In some cases, prolonged shedding of virus is described requiring prolonged use of barrier precautions
(144,
145,
146,
147 and 148). Diagnosis and the cause of upper respiratory infections should be established in HSCT patients, because they can progress to serious complications, some can be treated with antiviral agents, and others require precautions and rarely prophylaxis of exposed healthcare workers (
143). HSCT candidates with upper respiratory tract symptoms, if possible, should postpone conditioning therapy until symptoms resolve (
143) (see
Table 59-1).
Adenovirus Adenoviruses are nonenveloped, doublestranded DNA viruses 70 to 90 nm in diameter
(149). At least 7 human adenovirus subgroups, including 52 serotypes, have been documented
(150). The incidence of disease in HSCT patients ranges from 5% to 27% in different studies
(151,
152,
153,
154,
155,
156 and 157). Among HSCT recipients, especially children, the common serotypes that cause disease are 31 in subgroup A; 7, 11, 34, and 35 in subgroup B; 1, 2, 5, and 6 in subgroup C; and 4 in subgroup E
(158). One group found that subgroup B serotype 35 was the most prevalent adenovirus strain in their institution, and half of the adult patients infected with this strain had the same serotype recovered from cultures prior to HSCT
(152). Most of reported cases were diagnosed during the first 100 days posttransplant; however, the onset of adenoviral disease after 100 days has also been reported
(152,
154,
159). HSCT patients who develop adenovirus infections can present with upper and lower respiratory tract illness, acute hepatitis, gastrointestinal disease, acute hemorrhagic cystitis, nephritis, conjunctivitis, and central nervous system disease
(140,
149,
159,
160,
161,
162,
163 and 164). Patients who have recently undergone transplantation have an increased risk of severe disease (OR = 2.7)
(165).
Disseminated adenovirus infection, in which two or more organ systems are involved, is associated with a 60% mortality rate
(140,
163,
166). The mortality rate may be as high as 70% in patients with pneumonia and disseminated disease
(154,
167,
168). Lymphopenia (<300 per µL) is one of the significant risk factors for severe disease, because lymphocytes play an important role in clearance of adenovirus viremia
(154,
169,
170). Receipt of an allogeneic transplant, presence of GVHD, and receipt of concurrent immunosuppressive therapy are risk factors for disseminated infection
(163,
171). In addition, others have reported that the incidence of adenovirus is higher in children than adults
(172).
The diagnosis of adenovirus infection has traditionally been made by isolation of the virus in culture or by documentation of adenovirus in tissue. PCR is emerging as a promising diagnostic modality that provides a more rapid diagnosis and can be a monitoring tool for the virus
(156,
173,
174,
175 and 176).
Because they are nonenveloped viruses, adenovirus are highly resistant to chemical and physical agents and can remain infectious at room temperature for prolonged periods of time, up to 49 days on plastic and up to 35 days on metal
(150,
177). They are stable at low pH and resistant to gastric and biliary secretions allowing them to replicate and achieve high viral loads in the gastrointestinal tract
(150).
Transmission can occur by inhalation of aerosolized droplets, direct and indirect contact, fecal-oral spread, or exposure to infected tissue or blood (
126,
159). In general, type-specific immunity develops after a self-limited, 2-week illness, although latent infection may be established in lymphoid tissue
(149). Outbreaks have been reported primarily in pediatric HSCT patients
(167,
178,
179 and 180). The clinical presentation described in these outbreaks is diarrhea
(178,
179 and 180).
Because the microorganism can be transmitted from person to person, attention to infection control practices is important. Recommendations for isolation precautions in a hospital setting depend on the type of clinical syndrome (
126). Patients with diarrhea should be placed on Contact Precautions for at least the duration of illness (
127). Since immunocompromised hosts may have asymptomatic shedding of adenovirus for months after infection, precautions should be continued for the duration of hospitalization or viral shedding to prevent transmission (
126). For respiratory disease, conjunctivitis, or disseminated infection, Droplet and Contact Precautions should be maintained for at least the duration of illness (
126,
127).
Environmental cleaning with approved disinfectants such as a chlorine-based product, ethyl alcohol, or ethanol mixed with quaternary ammonium compounds is important to prevent spread of the microorganism (
126). High-level disinfectants maybe used for instruments when applicable
(181).
Influenza Influenza is a segmented RNA virus with three subtypes, A, B, and C. The former two most commonly cause infection in humans. The virus is characterized by its hemaglutinin (H) and neuraminisase (N) moieties. Beyond the hemaglutinin and neuraminidase, minor genetic variations occur annually so that hosts can be susceptible to any strain that emerges each year
(182). Influenza causes a febrile syndrome characterized by the sudden onset of fever, myalgias, cough, and sometimes gastrointestinal complaints
(182,
183 and 184). It can lead to viral pneumonia, encephalitis, myocarditis, rhabdomyolysis, and other disseminated processes
(185,
186,
187,
188,
189 and 190). Secondary bacterial infections with
S. pneumoniae,
S. aureus, and methicillin-resistant
S. aureus (MRSA) are well described
(191,
192,
193 and 194). Immunocompromised patients receiving HSCT are considered to be at high risk for healthcare-associated influenza. Hospital outbreaks of influenza often occur during community epidemics and can be explosive among hospitalized high-risk patients and have been documented with the same frequency among neutropenic and nonneutropenic and autologous and allogeneic HSCT recipients
(195). Whimbey et al.
(195) found that almost one-third (29%) of the hospitalized adult HSCT recipients had influenza type A cultured after developing respiratory symptoms. Hospital transmission was responsible for 60% of these 68 infections. Seventy-five percent of the cases were complicated by pneumonia and 17% (1/6) of these patients died
(195).
Pandemic H1N1 influenza, which emerged in 2009, has also been associated with morbidity and mortality in HSCT patients
(145,
196,
197 and 198). Five of thirteen HSCT recipients infected with H1N1 influenza had lower respiratory tract involvement that occurred when they were profoundly neutropenic
(196). Only one patient with lower respiratory tract infection survived, whereas all with upper respiratory tract infections were alive at follow up through 100 days
(196).
Infection prevention and control of influenza in the HSCT population can be challenging, because many of these patients have prolonged infection and viral shedding. Gooskens et al.
(144) evaluated eight immunosuppressed patients with prolonged influenza virus infection. Virus was shed for more than 2 weeks and it was found that shedding was associated with lymphocytopenia, lower respiratory tract infection, and development of drug resistance during oseltamivir treatment
(144). Although patients who received antiviral treatment had clinical improvement, lymphocyte reconstitution was required for complete viral clearance
(144). A similar finding has been noted in patients with pandemic H1N1 influenza infection
(145). Tramontana et al. reported on 17 HSCT patients and 15 oncologic patients with laboratory-confirmed pandemic H1N1 influenza. All HSCT patients <100 days posttransplant or with severe GVHD required ICU admission, and the inhospital mortality rate was 21.9%
(145). Virus was shed up to 28 days during oseltamivir therapy. An H275Y mutation developed in four of seven patients who were PCR positive after 4 days of oseltamivir therapy
(145). These studies suggest that HSCT patients should not be removed from Droplet Precautions until it is documented that they are no longer shedding influenza virus
(145).
Outbreaks of influenza among hospitalized patients including HSCT patients are commonly reported
(108,
199,
200,
201,
202 and 203). Healthcare workers are often implicated as potential sources of transmission demonstrating the importance that all healthcare personnel who work in HSCT units receive annual influenza vaccination
(201,
202 and 203). Additional interventions in the setting of an outbreak include strict infection prevention and control precautions. These include enforcing barrier precautions, masking universally, minimizing the number of staff entering the unit and patients’ rooms, screening of visitors and other personnel, delaying nonessential admissions to the unit, surveying
actively for respiratory virus infection in all patients and unit staff, and using antiviral chemoprophylaxis for HSCT patients regardless of earlier vaccine status for the duration of the outbreak (
108,
143).
Influenza vaccine should be administered to patients prior to transplantation, because response to influenza vaccine is extremely limited for at least 6 months after transplantation
(204). Influenza vaccine does not fully protect patients until 2 years following HSCT. All family members and close or household contacts of HSCT recipients should continue to be vaccinated annually as long as the HSCT recipient remains immunosuppressed (
143) (see also
Chapter 42).
Parainfluenza Parainfluenza viruses are divided into four serotypes (
205). Of the four types, parainfluenza 3 is the most common, followed by serotypes 1 and 2 (
205). Parainfluenza virus can cause serious lower respiratory tract disease in both adults and children who undergo HSCT
(206). Significant risk factors for progression from upper to lower respiratory tract infection have included corticosteroids use and lymphopenia (
205,
207,
208). Parainfluenza outbreaks in HSCT recipients have been reported
(109,
110,
209,
210). These outbreaks were caused by introduction of parainfluenza 3 virus strains from a community reservoir into the HSCT population with subsequent person-to-person transmission within the unit
(110,
211). Some studies revealed that, most likely, transmission occurred initially in the outpatient setting
(209,
210 and 211). The mortality rate in HSCT patients infected with parainfluenza has been reported to be 33% to 38.5%
(110,
208,
210). Infection prevention and control measures much like those described for influenza are the most important strategy for preventing parainfluenza infection and transmission among HSCT recipients. Many outbreaks report the need for prolonged enforcement of surveillance, isolation, cohorting, and other infection prevention issues
(210,
211). The outpatient setting should also be included in these prevention strategies.
Respiratory Syncytial Virus RSV accounts for one-third to one half of community-acquired respiratory viral infections among HSCT recipients
(138,
141). Healthcare-associated transmission has been well documented among HSCT recipients, and the risk of healthcare-associated infection increases during community outbreaks
(106,
107,
212). Almost 60% (19/33) of the RSV infections in HSCT recipients are complicated by pneumonia, with an associated mortality between 51% and 80%. This infection may be complicated by pneumonia, and the risk of progression to pneumonia is greater in patients who are pre-engraftment, who underwent HSCT <1 month prior to infection, who are lymphopenic, and who have preexisting obstructive airway disease (
103,
143). RSV spreads via large droplets from respiratory secretions or by contamination of hands or surfaces and subsequent contact with the mucous membranes of the eyes and nose. Prevention of this viral infection is the best strategy given the limited therapeutic options and the tremendous morbidity associated with these infections. Comprehensive programs that include surveillance and isolation have been shown to prevent transmission among children
(213). A multifaceted infection control strategy is essential in the event of a healthcare-associated RSV outbreak; prompt identification of cases with active screening, cohorting, isolation of infected patients, screening of staff and visitors for upper respiratory tract symptoms, cleaning of equipment, and educating staff have been demonstrated as effective measures in controlling outbreaks on HSCT units
(214).
Coronavirus Coronaviruses are a family of single-stranded RNA viruses that cause respiratory disease among humans. Until the 2002 to 2003 respiratory virus season, two coronavirus strains, OC43 and 229E, were known to cause respiratory disease
(215). Patients generally present with mild upper respiratory symptoms, although pneumonia has been described
(215,
216). Limited data are available about the clinical syndromes among HSCT patients. In a case series of two patients who had received autologous transplants, both developed pneumonia characterized by a dry, nonproductive cough and interstitial infiltrates on radiographs
(139). Milano et al.
(146) conducted a prospective surveillance study in allogeneic HSCT recipients and reported that the incidence of coronavirus infection among these patients was 11.1%. Nine of twenty-two patients were asymptomatic and 3/22 patients had prolonged viral shedding
(146).
In 2003, severe acute respiratory syndrome was described, which has rejuvenated interest in this virus and the clinical syndromes it causes. Published reports from several cohorts of patients noted a febrile syndrome characterized by cough, myalgias, dyspnea, and occasionally diarrhea with some patients going on to develop respiratory failure
(217,
218 and 219). The spectrum of disease in HSCT patients is not well described.