Glycolysis, Tricarboxylic Acid Cycle, and Oxidative Phosphorylation

Chapter 21 Glycolysis, Tricarboxylic Acid Cycle, and Oxidative Phosphorylation


For the generation of metabolic energy, all major nutrients are degraded to acetyl coenzyme A (acetyl-CoA). These include carbohydrates, fat, protein, and alcohol (Fig. 21.1). Acetyl-CoA is also called “activated acetic acid” because it consists of an acetyl (acetic acid) group that is bound to coenzyme A by an energy-rich thioester bond.



In the mitochondria, the two carbons of the acetyl group become oxidized to CO2 in the tricarboxylic acid (TCA) cycle (also called the citric acid cycle or Krebs cycle), whereas hydrogen (consisting of electron and proton) is transferred from the substrate to the coenzymes nicotinamide adenine dinucleotide (NAD+) and flavin adenine dinucleotide (FAD). Finally, the electrons are transferred from the reduced coenzymes NADH and FADH2 to the respiratory chain to react with molecular oxygen. The reoxidation of the reduced coenzymes produces the bulk of the cellular ATP in the process of oxidative phosphorylation.


This chapter shows how glucose is oxidized and how this process produces energy in the form of ATP. Glucose is not only the most abundant monosaccharide in food but is also produced from other monosaccharides, by the breakdown of the storage polysaccharide glycogen, and from amino acids and other noncarbohydrate substrates (Fig. 21.2).




Glucose uptake into the cells is regulated


Glucose is not sufficiently lipid soluble to enter cells by passive diffusion across the plasma membrane. Dietary glucose enters the intestinal mucosal cells mainly by sodium cotransport, but the uptake of glucose from blood or interstitial fluid into cells occurs by facilitated diffusion.


Table 21.1 summarizes the most important facilitated-diffusion glucose carriers. One of these carriers, GLUT4, is insulin dependent. Its deposition in the plasma membrane is enhanced by insulin (Fig. 21.3). The consequence is that muscle and adipose tissue take up glucose after a carbohydrate-rich meal, when the insulin level is high, but not during fasting, when the insulin level is low. Muscle and adipose tissue do not depend on glucose but can subsist on fatty acids and other nutrients if needed. During fasting, glucose is redirected from muscle and adipose tissue to tissues that depend on glucose, including brain and erythrocytes.


Table 21.1 Most Important Glucose Transporters



























Transporter Expressed in Function
GLUT1 Most tissues Basal glucose uptake
GLUT2 Liver, intestine, pancreatic β-cells High-capacity glucose uptake
GLUT3 Brain Neuronal glucose uptake
GLUT4 Muscle, adipose tissue, heart Insulin-dependent glucose uptake
GLUT5 Intestine Fructose transport



Glucose degradation begins in the cytoplasm and ends in the mitochondria


The steps in glucose oxidation are summarized in Figure 21.4. The initial reaction sequence, known as glycolysis, is cytoplasmic. It turns one molecule of glucose (six carbons) into two molecules of the three-carbon compound pyruvate. All cells of the body are capable of glycolysis.



Under aerobic conditions, pyruvate is transported into the mitochondrion, where it is turned into the two-carbon compound acetyl-CoA. Acetyl-CoA then enters the TCA cycle by reacting with the four-carbon compound oxaloacetate to form the six-carbon compound citrate. Citrate is converted back to oxaloacetate in the remaining reactions of the TCA cycle.


In these pathways, the hydrogen of the substrate is transferred to the coenzymes NAD+ and FAD (see Chapter 5). The reduced coenzymes donate electrons to the respiratory chain of the inner mitochondrial membrane, which in turn donates them to molecular oxygen. The reoxidation of the reduced coenzymes is highly exergonic. It is the energy source for ATP synthesis by oxidative phosphorylation. The TCA cycle and oxidative phosphorylation take place in all cells that contain mitochondria.



Glycolysis begins with atp-dependent phosphorylations


After entering the cell, glucose is phosphorylated to glucose-6-phosphate by hexokinase (Fig. 21.5). The hexokinase reaction is irreversible for two reasons: Its ΔG0′ is strongly negative (−4.0 kcal/mol) because an energy-rich phosphoanhydride bond in ATP is cleaved while a “low-energy” phosphate ester bond is formed (Table 21.2), and the ATP concentration in a healthy cell is always far higher than the ADP concentration.



Table 21.2 Standard Free Energy Changes of Glycolytic Reactions

image

ΔG0′, Standard free energy change; Pi, inorganic phosphate.


The hexokinase reaction is always the first step in glucose metabolism, whether glucose is being used for glycolysis or for other metabolic pathways. Glucose-6-phosphate cannot leave the cell on a membrane carrier as glucose can. Indeed, phosphorylated intermediates in general do not cross the plasma membrane.


In glycolysis, glucose-6-phosphate is in equilibrium with fructose-6-phosphate through the reversible phosphohexose isomerase reaction. Fructose-6-phosphate is then phosphorylated to fructose-1,6-bisphosphate by phosphofructokinase (PFK). This is the first irreversible reaction specific for glycolysis. It is its committed step.


The reactions from glucose to fructose-1,6-bisphosphate require two high-energy phosphate bonds in ATP. This initial investment has to be recovered in later reactions of the pathway.





Most glycolytic intermediates have three carbons


The six-carbon intermediate fructose-1,6-bisphosphate is cleaved into two triose phosphates by the enzyme aldolase. Carbons 1, 2, and 3 of the sugar form dihydroxyacetone phosphate, and carbons 4, 5, and 6 form glyceraldehyde-3-phosphate. The triose phosphates are interconverted in the reversible triose phosphate isomerase reaction.


Aldolase and triose phosphate isomerase establish an equilibrium between fructose-1,6-bisphosphate, dihydroxyacetone phosphate, and glyceraldehyde-3-phosphate. Although only glyceraldehyde-3-phosphate proceeds through the remaining glycolytic reactions, triose phosphate isomerase ensures that all six glucose-derived carbons can proceed through the pathway.


Glyceraldehyde-3-phosphate is converted to the energy-rich intermediate 1,3-bisphosphoglycerate by glyceraldehyde-3-phosphate dehydrogenase. The enzyme couples the exergonic oxidation of the aldehyde group in the substrate with the endergonic formation of an energy-rich bond between the newly created carboxyl group and inorganic phosphate. The reaction also forms a substrate for oxidative phosphorylation by reducing NAD+ to NADH.


Simple hydrolysis of the mixed anhydride bond in 1,3-bisphosphoglycerate would release 11.8 kcal/mol in the form of heat. Rather than wasting this energy by hydrolyzing the bond, the enzyme phosphoglycerate kinase transfers the phosphate to ADP, forming ATP. This strategy of forming an energy-rich intermediate that is then used for ATP synthesis is called substrate-level phosphorylation.


3-Phosphoglycerate is isomerized to 2-phosphoglycerate by phosphoglycerate mutase. “Mutase” is an old-fashioned name for isomerases that shift the position of a phosphate group in the molecule. 2-Phosphoglycerate, in turn, is dehydrated to phosphoenolpyruvate (PEP) by enolase.


The last enzyme of glycolysis, pyruvate kinase, makes substrate-level phosphorylation by transferring the phosphate group of PEP to ADP. Although ATP is synthesized, this reaction is highly exergonic with a standard free energy change (ΔG0′) of −7.5 kcal/mol. This implies a free energy content of 14.8 kcal/mol for the phosphate ester bond in PEP. Why is this phosphate ester so unusually energy rich? The initial transfer of phosphate from PEP to ADP is indeed endergonic. However, the enolpyruvate formed in this reaction rearranges almost immediately to pyruvate. This highly exergonic reaction removes enolpyruvate from the equilibrium (Fig. 21.6).



Overall, the reactions of glycolysis produce a net yield of two ATP molecules and two NADH molecules for each molecule of glucose (Table 21.3).


Table 21.3 Products Formed during Conversion of One Molecule of Glucose to Two Molecules of Pyruvate in Aerobic Glycolysis*
























Enzyme Product (Molecules)
Hexokinase −1 ATP
Phosphofructokinase −1 ATP
Glyceraldehyde-3-phosphate dehydrogenase +2 NADH
Phosphoglycerate kinase +2 ATP
Pyruvate kinase +2 ATP
  2 ATP + 2 NADH

* Note that all reactions beyond the aldolase reaction occur twice for each glucose molecule.


Only the hexokinase, PFK, and pyruvate kinase reactions are “irreversible.” The aldolase and triose phosphate isomerase reactions have very unfavorable equilibria (see Table 21.2). Nevertheless they can proceed because fructose-1,6-bisphosphate is formed in the irreversible PFK reaction and glyceraldehyde-3-phosphate is rapidly consumed in the next reactions of the pathway. The actual equilibrium of the glyceraldehyde-3-phosphate dehydrogenase reaction is far more favorable than suggested by its ΔG0′ value of +1.5 kcal/mol because NAD+ is far more abundant than NADH in the aerobic cell.




Phosphofructokinase is the most important regulated enzyme of glycolysis


Most tissues glycolyze heavily after a carbohydrate meal but switch to fatty acid oxidation during fasting. The long-term control of glycolysis, particularly in the liver, is affected by changes in the amounts of some key glycolytic enzymes, triggered by nutrients and hormones. In general, insulin and glucose increase the levels of glycolytic enzymes, whereas glucagon and fatty acids have the opposite effect.


Of the important hormones, insulin rises in response to elevated blood glucose after a meal. It stimulates glucose consumption in many tissues, both by glycolysis and by other pathways. Glucagon rises in response to low blood glucose during fasting. It reduces glucose consumption and stimulates glucose production by the liver.


The short-term control of glycolysis depends mainly on the allosteric enzyme PFK, which catalyzes the committed step of glycolysis. PFK is






The response to adenine nucleotides ensures that glycolytic activity increases when more ATP is needed (e.g., in contracting muscle). Citrate is a mitochondrial metabolite that signals an abundance of energy and metabolic intermediates, and low pH dampens glycolytic activity when pyruvic and lactic acid, the end products of glycolysis, accumulate to dangerous levels.


Additional control sites are insulin-dependent glucose uptake into the cell by the GLUT4 transporter in muscle and adipose tissue as well as the other irreversible enzymes of glycolysis, hexokinase and pyruvate kinase. In most tissues (but not the liver), hexokinase is competitively inhibited by its own product, glucose-6-phosphate. This prevents the accumulation of glucose-6-phosphate when the supply of glucose exceeds the capacity of the metabolizing pathways. Glucose-6-phosphate must not be allowed to accumulate because it would tie up the cell’s phosphate and thereby impair ATP synthesis. Pyruvate kinase, finally, is inhibited by ATP in many tissues, including the liver.



Lactate is produced under anaerobic conditions


Glycolysis produces ATP without consuming oxygen. Does this mean that we can live without oxygen by turning glucose into pyruvate? Not quite. The immediate problem is that glycolysis turns NAD+ into NADH. Without a mechanism to regenerate NAD+, glycolysis would soon grind to a screeching halt for lack of NAD+.


The solution to this problem is simple (Fig. 21.7). The enzyme lactate dehydrogenase (LDH) regenerates NAD+ by transferring the hydrogen of NADH to the keto group of pyruvate:




image




image



The equilibrium of the LDH reaction favors lactate, but the reaction is physiologically reversible because NAD+ is far more abundant than NADH under aerobic conditions. In fact, lactate is a metabolic dead end. The LDH reaction is the only way to channel lactate back into the metabolic pathways.


The overall balance of lactate formation by anaerobic glycolysis is



image



Thus it is possible to make ATP in the absence of oxygen. Carbohydrates are the only metabolic substrates that can produce ATP under anaerobic conditions. A major limitation of anaerobic glycolysis is that the protons that are formed along with the lactate anion can create a serious pH problem.


Another limitation is that the two ATP molecules formed in glycolysis capture only 14.6 kcal of useful energy, whereas the complete oxidation of glucose produces approximately 270 kcal (see Table 21.7). Therefore anaerobic glycolysis is useful only under certain circumstances, for example:





Table 21.7 Energy Yield from Glucose Oxidation



























Pathway Yield (Molecules)
Glycolysis 2 ATP
  2 NADH → 4 or 6 ATP*
Pyruvate dehydrogenase 2 NADH → 6 ATP
Tricarboxylic acid cycle 2 GTP → 2 ATP
  6 NADH → 18 ATP
  2 FADH2 → 4 ATP
  36 or 38 ATP

The energy yield from cytoplasmic NADH depends on the shuttle system used.




Pyruvate is decarboxylated to acetyl-CoA in the mitochondria


Under aerobic conditions, pyruvate is oxidized in the mitochondria. It diffuses through the pores in the outer mitochondrial membrane and is transported across the inner mitochondrial membrane into the mitochondrial matrix, where it is oxidatively decarboxylated to acetyl-CoA:



image



where CoA-SH = uncombined CoA. This irreversible reaction is catalyzed by pyruvate dehydrogenase, a multienzyme complex with three components:





In addition to the tightly bound prosthetic groups, the cosubstrates NAD+ and CoA are required for the reaction.


The structures of thiamin pyrophosphate (TPP) and lipoic acid are shown in Figure 21.8. TPP acts as a carrier of pyruvate and of the hydroxyethyl group that is formed by pyruvate decarboxylation. Lipoic acid participates as a redox system and carrier of the acetyl group. The reaction sequence is shown in Figure 21.9.




With the exception of lipoic acid, the coenzymes of pyruvate dehydrogenase require vitamins for their synthesis: pantothenic acid (CoA), niacin (NAD), riboflavin (FAD), and thiamin (TPP). A deficiency of any of these vitamins can impair the pyruvate dehydrogenase reaction. In thiamin deficiency (beriberi), for example, the blood levels of pyruvate, lactate, and alanine are elevated after a carbohydrate-rich meal. Pyruvate accumulates because its major reaction is blocked, and most of it is either reduced to lactate or transaminated to alanine.



The TCA cycle produces two molecules of carbon dioxide for each acetyl residue


The TCA cycle, also known as the citric acid cycle or Krebs cycle, is the final common pathway for the oxidation of all major nutrients. It takes place in the mitochondrial matrix, and it is active in all cells that possess mitochondria.


In the first reaction, the acetyl group of acetyl-CoA reacts with the four-carbon compound oxaloacetate to form the six-carbon compound citrate. This irreversible reaction (Table 21.5) is catalyzed by citrate synthase. The remaining reactions regenerate oxaloacetate from citrate, with two carbons released as carbon dioxide (Fig. 21.12).


Table 21.5 Standard Free Energy Changes (ΔG0′) of Pyruvate Dehydrogenase Reaction and Tricarboxylic Acid Cycle Reactions















































Enzyme ΔG0′ (kcal/mol) Products
Pyruvate dehydrogenase −8.0 CO2, NADH
Citrate synthase −8.5  
Aconitase +1.6  
Isocitrate dehydrogenase −2.0 CO2, NADH
α-Ketoglutarate −8.0 CO2, NADH
dehydrogenase    
Succinyl-CoA synthetase −0.7 GTP
Succinate dehydrogenase ≈0 FADH2
Fumarase −0.9  
Malate dehydrogenase +7.1 NADH




Citrate is isomerized to isocitrate by aconitase. The enzyme first dehydrates citrate to aconitate and then hydrates aconitate to isocitrate (Fig. 21.13). At equilibrium, the composition is 90% citrate, 3% aconitate, and 7% isocitrate.



Fluoroacetate has occasionally been used as a rat poison but is interesting for terrorists as well. It is metabolically converted to fluorocitrate by the same enzymes that otherwise metabolize acetate (Fig. 21.14). The resulting fluorocitrate is a potent inhibitor of aconitase.



Isocitrate is oxidatively decarboxylated to α-ketoglutarate (2-oxoglutarate) by isocitrate dehydrogenase. Oxalosuccinate is an enzyme-bound intermediate in this reaction (Fig. 21.15). The isocitrate dehydrogenase of the TCA cycle is an NAD-linked enzyme.



The next enzyme of the cycle, α-ketoglutarate dehydrogenase, resembles pyruvate dehydrogenase in structure, reaction mechanism, and coenzyme requirements. However, it works on α-ketoglutarate rather than pyruvate and produces succinyl-CoA rather than acetyl-CoA.


In the reversible succinyl-CoA synthetase (also known as succinyl thiokinase) reaction, the hydrolysis of the energy-rich thioester bond in succinyl-CoA is coupled to the synthesis of GTP. This is yet another example of substrate-level phosphorylation, in which a high-energy bond in a metabolic intermediate is used for the synthesis of an energy-rich nucleotide. GTP is equivalent to ATP, with which it is in equilibrium through the nucleoside diphosphate kinase reaction:



image



Succinate is a four-carbon dicarboxylic acid. In the remaining reactions, two hydrogen atoms of succinate are replaced by oxygen to complete the cycle with the formation of oxaloacetate.


The enzyme succinate dehydrogenase (SDH) forms fumarate by transferring two hydrogen atoms from succinate to its prosthetic group FAD and from FADH2

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Jun 18, 2016 | Posted by in BIOCHEMISTRY | Comments Off on Glycolysis, Tricarboxylic Acid Cycle, and Oxidative Phosphorylation

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