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CELL TYPE |
GENE SIGNATURE |
AITL |
CD2+CD3+CD4+CD5+ CD7−CD8+CD69+CD10+ CCR4−CXCR3+CD134+ 2,67,68,69 |
Upregulated genes5,7,70
Cytokine/chemokine signature
LTA (TNFSF1), LTB (TNFSF3), TNFRSF4 (OX40/CD134), TNFRSF17 (BCM/CD269), TNFSF8 (CD30L/CD153), CSF2RB (CD131), CCL17, CCL19, CCL20, CCL21, CCL22, CXCL8 (IL8), CXCL5, CXCL13, CXCR5, CD79a, CD19, FCRL5, CD22, IgH, IgK, IgL, MS4A1 (CD20), CR1 (CD21), CD23, CD24, CD37, FCRLA, AICD, ID3, SpiB, CR1, CR2 (CD21), CD23, CLU, CD200, C4orf7, C1S, C3, C4A, C7
T cell–specific genes
COS, CTLA4, SOX8, XKR4, GPR64, PTGDS, NTN2L, PLA2G2D, ALPK2, NT5DC4
Cell-to-cell communication
CD151, CD200, CD24, CD40LG, CDH11, CDH3, CLEC4G, ITGA5, ITGAX, ITM2C, KAL1, L1CAM, MAL, MME, PCDH17, PCDHA, PCDHG, PDCD1, PLEKHC1
Vascular biology
AMOTL1, ANGPT2, EDG2, EDG3, EFNB2, ENG, EPAS1, EPHA2, FGF11, GAS6, GJA1, GJA4, GP1BA, L1CAM, PGF, SELP, SERPINF1, SERPINH1, THBD, THY1, VCAM1, VEGF, VWA1
Humoral immune response
C1QTNF1, C1R, C3, CLU, CR2, FCAMR, IGH, IGHM, IGKC, IGL, IGLC2, IGLV3-25, IGSF3, SDC1, SPIB, TCF3, TNFRSF17
Chemokine and cytokine pathways
CCL19, CCL20, CCL22, CCL24, CCL26, CXCL13, CXCL14, IL4, LIF, OSMR
Extracellular matrix
ADAM19, ADAMTS9, CHPF, COL15A1, COL23A1, COL27A1, COL6A1, COL6A2, CTSH, EFEMP2, FNDC1, FOXF1, HS3ST1, LAD1, LAMB2, LAMC2, MMP1, MMP12, PCOLCE, TGFB1/1, TGFB3, TIMP1, VTN
Others/miscellaneous
NFATC1, PIM2, VAV2, Bcl-6 IGHM, IGHG, IGHA, IGLC
Genes downregulated vs. PTCL-NOS5
Ubiquitination
MLL3, MYLIP, TRIM25, TRIM38, TRIM52, USP8
Regulation of transcription
ADAR, ANKIB1, ELF2, HOXA7, ID2, POU2F1, PPARBP, SP100, SP110, SP4, TAF1, TFAP2A, TRERF1, ZNF12, ZNF148
Immune response: chemotaxis
CCR7, CD47, G1P2, IFI44, IFI44L, IFIT2, IFIT3 |
ALCL ALK+
ALCL ALK− |
CD3−/+pSHP2+pSTAT3+CCR4−CXCR3− 2,11 |
Upregulated genes7,71
ALK, CD30, MUC1, IL26, IL31RA, IL9, IL1R, IL17A, IL17F, ROR γ, CCNA1, AGT, PDE4DIP, UPK1B, RRAD, RARa, NRCAM, TMEM158, CA12, SERPINB3, SERPINB4, GAS1, PRF1, TMEM158, IL2RA, MCAM, C14orf101, IMPA2, TEAD4, PTPRG, G0S2, C13orf18, AGT, SNFT, TNFRSF8, FUT7, NQO1, MYO10, SLC12A8, SPP1, CLEC3B, RHOC, S100A9, FBN1, ANXA2, CCDC46, CD63, ETS2, EVI1, GAS1, IL1RAP, IL2RA, IQCG, ITG81, LEPROT, LGALS1, SLC20A1, TCEA2, TST, UGCG
Genes overexpressed vs. ALCL ALK−72
BCL6, PTPN12, CEBPB, and SERPINA1 |
ALCL Cutaneous |
CD3+ 11 |
Upregulated genes2,16
CCR4, BCL2
Gene overexpressed vs. ALCL ALK+72
CCR7, CNTFR, IL22, IL21
Downregulated genes2
CXCR3 |
ALCL (general) |
CD4+CD8−CD15−CLA+EMA− 13 |
Upregulated genes2
CCR4 |
CD3−/+CD2+CD4+CD8+CD15−/+CD30+CD43+CD56−/+TCR−EMA+PAX5−NFTAC+PDGFRA−/+ 11,73 |
Upregulated genes70
CTLA1, GZMB, MCL-1, IL13RA2
Early response regulatory genes70
FOS, JUN, EGR, EGFR
Stromal remodeling genes70
COL6A1, COL7A1, CALD1, GJB1, KRT6A, KRT10, MMP3, MMP1, TIMP1
Cell proliferation genes70
VEGF, VEGFB, DTR, EGFR, TGFB |
ATLL |
CD3+CD4+CD8−CD7−CD25+CD29−CD45RA+CD45RO−HLADR+CCR4+CXCR3−L-Selectin+ 2,19,20,58 |
Upregulated genes7,21
TCRa, TCRb, CD1e, CTLA4, CD99, TRAC, TNFRSF25 (DR3), CD27, LEF1, NFATC1, CCR4, CCL13, IL23R, MAGEA4, MAGEA9, MAGEA4B, PGDS, AICDA, MTA3, IKZF2, RGS13, PTHLH, RGS13, CADM1 (TSLC1), c-Myc, TIAM1, PDE8B, DOK5, ARNT2, UST, PGDS, MYCN, PDE8B, CEBPA, RGS13, PTHLH, SMARCA2, CD99, CADM1 (TSLC1), CCR4, RGS2, SPINK2, RORA, FOXP3
Downregulated genes24,59
P15, P16, P18, P53 |
MF/SS |
CD2+CD3+CD4+CD5+CD8−CD45RO+CD7−CLA+CCR4+CXCR3− 2,32,34 |
Upregulated genes34,37
RAF1, CTSB, PAK1, JUNB, FGFR1, PTPN, BCR, MYCL1, PIK3CA, HRAS, MYBL2, ZNF217, IP-10, PLS3, GATA3, TWIST
Downregulated genes26
BCL7A, PTPRG, SMAC/DIABLO, RHOF, p73, p16, CHFR, p15, TMS1 |
CD8+ CTCL |
CD2+CD3+CD4−CD5−/+CD8+CD45RO+CD7−/+CLA−/+CCR4+CXCR3−CD25−CD30−CD45RA+ 13,28,29 |
Upregulated genes28
BF1, TIA1, BCL2
Downregulated genes28
GZMB |
EATL |
CD3+CD8−/+CD56−/+CD103+ 6,74 |
Upregulated genes6
MYC |
HSTCL |
CD2+CD3+CD4−CD5−CD7+CD8−/+CD45RO+CD16+/−CD56+/−CD57−CD19−CD20−CD43+ 42,75,76 |
Upregulated genes41
TIA-1 |
NKTCL |
CD2+CD3+CD56+CCR4−CXCR3−pSTAT3+pAKT+ 2,13 |
Differently expressed vs. normal NK48
CDH1, ITGA9, ITGB4, VCAM1, CCND1, CCL18, CCL19, CCL2, CCL8, CXCL10, CXCL12, CXCL9, IL13RA1, IL6R, IL33, IL8, EBI3, BASP1, HCK, TNFRSF10D, COL1A1, COL1A2, COL3A1, FN1, TIMP1, TIMP2, TIMP3, GHR, PDGFB, PDGFC, PDGFRA, CD86, HLA-DOA, HLA-DRA, IL4I1, SLAMF8, TLR2, TLR7, TLR8, CD163, MAFB, MET, MYC, STAT1, STAT2, KDR, THBD, VEGFA, VEGFC, VWF, AIM2, CD40, FZD1
Differentially expressed genes vs. PTCL-NOS48
BCL2L2, FASLG, ITGAM, CCL4, CCL5, IL20, IL2RB, TGFB2, CTSW, GZMA, GZMB, GZMH, PRF1, APOBEC3G, CD244, KIR2DL3, KIR2DS5, KIR2DL4, KIR2DL5A, KIR2DS4, KIR3DL1, KIR3DL2, KIR3DL3, KLRD1, NCAM1, IRF6, MYC, RHOC, ATF6, MAPK1, PTPN22 |
SPTCL |
CD2+CD3+CD4−/+CD8−/+CD25−/+CD30−/+CD56−/+CD57−CD45RO+ 13,42,44 |
Upregulated genes6,44
TIA-1, PRF1, GZMB |
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